% Bibliography for "Attracting oscillations in sequential distributive multisite phosphorylation". % All entries were checked against Crossref / arXiv / publisher pages on 17 September 2026. @article{AngeliSontag08, author = {Angeli, David and Sontag, Eduardo D.}, title = {Translation-invariant monotone systems, and a global convergence result for enzymatic futile cycles}, journal = {Nonlinear Anal. Real World Appl.}, volume = {9}, number = {1}, pages = {128--140}, year = {2008}, note = {\href{https://doi.org/10.1016/j.nonrwa.2006.09.006}{doi:10.1016/j.nonrwa.2006.09.006}} } @article{Banaji18, author = {Banaji, Murad}, title = {Inheritance of oscillation in chemical reaction networks}, journal = {Appl. Math. Comput.}, volume = {325}, pages = {191--209}, year = {2018}, note = {\href{https://doi.org/10.1016/j.amc.2017.12.012}{doi:10.1016/j.amc.2017.12.012}} } @article{Banaji23, author = {Banaji, Murad}, title = {Splitting reactions preserves nondegenerate behaviors in chemical reaction networks}, journal = {SIAM J. Appl. Math.}, volume = {83}, number = {2}, pages = {748--769}, year = {2023}, note = {\href{https://doi.org/10.1137/22M1478392}{doi:10.1137/22M1478392}} } @article{BanajiBorosHofbauer22, author = {Banaji, Murad and Boros, Bal{\'a}zs and Hofbauer, Josef}, title = {Adding species to chemical reaction networks: preserving rank preserves nondegenerate behaviours}, journal = {Appl. Math. Comput.}, volume = {426}, pages = {127109}, year = {2022}, note = {\href{https://doi.org/10.1016/j.amc.2022.127109}{doi:10.1016/j.amc.2022.127109}} } @article{BanajiBorosHofbauer25, author = {Banaji, Murad and Boros, Bal{\'a}zs and Hofbauer, Josef}, title = {The inheritance of local bifurcations in mass action networks}, journal = {J. Nonlinear Sci.}, volume = {35}, number = {4}, pages = {Paper No. 72}, year = {2025}, note = {\href{https://doi.org/10.1007/s00332-025-10165-4}{doi:10.1007/s00332-025-10165-4}} } @article{Bluthgen06, author = {Bl{\"u}thgen, Nils and Bruggeman, Frank J. and Legewie, Stefan and Herzel, Hanspeter and Westerhoff, Hans V. and Kholodenko, Boris N.}, title = {Effects of sequestration on signal transduction cascades}, journal = {FEBS J.}, volume = {273}, number = {5}, pages = {895--906}, year = {2006}, note = {\href{https://doi.org/10.1111/j.1742-4658.2006.05105.x}{doi:10.1111/j.1742-4658.2006.05105.x}} } @article{BozemanMorales17, author = {Bozeman, Luke and Morales, Adriana}, title = {No oscillations in the {M}ichaelis--{M}enten approximation of the dual futile cycle under a sequential and distributive mechanism}, journal = {SIAM Undergrad. Res. Online}, volume = {10}, pages = {21--28}, year = {2017}, note = {\href{https://doi.org/10.1137/16S015565}{doi:10.1137/16S015565}} } @article{Chickarmane07, author = {Chickarmane, Vijay and Kholodenko, Boris N. and Sauro, Herbert M.}, title = {Oscillatory dynamics arising from competitive inhibition and multisite phosphorylation}, journal = {J. Theoret. Biol.}, volume = {244}, number = {1}, pages = {68--76}, year = {2007}, note = {\href{https://doi.org/10.1016/j.jtbi.2006.05.013}{doi:10.1016/j.jtbi.2006.05.013}} } @article{Ciliberto07, author = {Ciliberto, Andrea and Capuani, Fabrizio and Tyson, John J.}, title = {Modeling networks of coupled enzymatic reactions using the total quasi-steady state approximation}, journal = {PLoS Comput. Biol.}, volume = {3}, number = {3}, pages = {e45}, year = {2007}, note = {\href{https://doi.org/10.1371/journal.pcbi.0030045}{doi:10.1371/journal.pcbi.0030045}} } @article{Cohen00, author = {Cohen, Philip}, title = {The regulation of protein function by multisite phosphorylation -- a 25 year update}, journal = {Trends Biochem. Sci.}, volume = {25}, number = {12}, pages = {596--601}, year = {2000}, note = {\href{https://doi.org/10.1016/S0968-0004(00)01712-6}{doi:10.1016/S0968-0004(00)01712-6}} } @article{ConradiFeliuMincheva20, author = {Conradi, Carsten and Feliu, Elisenda and Mincheva, Maya}, title = {On the existence of {H}opf bifurcations in the sequential and distributive double phosphorylation cycle}, journal = {Math. Biosci. Eng.}, volume = {17}, number = {1}, pages = {494--513}, year = {2020}, note = {\href{https://doi.org/10.3934/mbe.2020027}{doi:10.3934/mbe.2020027}} } @article{ConradiMincheva14, author = {Conradi, Carsten and Mincheva, Maya}, title = {Catalytic constants enable the emergence of bistability in dual phosphorylation}, journal = {J. R. Soc. Interface}, volume = {11}, number = {95}, pages = {20140158}, year = {2014}, note = {\href{https://doi.org/10.1098/rsif.2014.0158}{doi:10.1098/rsif.2014.0158}} } @article{ConradiMincheva24, author = {Conradi, Carsten and Mincheva, Maya}, title = {In distributive phosphorylation catalytic constants enable non-trivial dynamics}, journal = {J. Math. Biol.}, volume = {89}, number = {2}, pages = {Paper No. 20}, year = {2024}, note = {\href{https://doi.org/10.1007/s00285-024-02114-8}{doi:10.1007/s00285-024-02114-8}} } @article{ConradiMinchevaShiu19, author = {Conradi, Carsten and Mincheva, Maya and Shiu, Anne}, title = {Emergence of oscillations in a mixed-mechanism phosphorylation system}, journal = {Bull. Math. Biol.}, volume = {81}, number = {6}, pages = {1829--1852}, year = {2019}, note = {\href{https://doi.org/10.1007/s11538-019-00580-6}{doi:10.1007/s11538-019-00580-6}} } @article{ConradiShiu18, author = {Conradi, Carsten and Shiu, Anne}, title = {Dynamics of posttranslational modification systems: recent progress and future directions}, journal = {Biophys. 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